Patents
1. Centromere detector and method for determining radiation exposure from chromosome abnormalities PCT/US11/59257 (WO2012061669A3). US Pat. App. Ser. No.13/822,289; U.S. Pat. No. 8,605,981; Germany Pat. No. 11 2011103687.
2. Smart Microscope system for Radiation Biodosimetry. US Pat. App. Ser. No. 16/057,710. U.S. Pat. No. 10,929,641; US Pat. App. Ser. No. 17/137,317, U.S. Pat. No. 11,501,545.
Peer-reviewed publications
1. Subasinghe A, Samarabandu J, Knoll J, Khan W, Rogan PK. An Image Processing Algorithm for Accurate Extraction of the Centreline from Human Metaphase Chromosomes. 2010 IEEE International Conference on Image Processing, pp 3613–3616. DOI: 10.1109/ICIP.2010.5652017. (2010)
2. Subasinghe A, Samarabandu J, Knoll J, Khan W, Rogan PK. An Accurate Image Processing Algorithm for Detecting FISH Probe Locations Relative to Chromosome Landmarks on DAPI Stained Metaphase Chromosome Images. IEEE 2010 Canadian Conference on Computer and Robot Vision. 2010. Pp 223-230. DOI: 10.1109/CRV.2010.36. (2010)
3. Subasinghe A, Samarabandu J, Knoll J, Rogan PK. Automated metaphase chromosome centromere refinement using fuzzy inference systems. 6th Canadian Student Conference on Biomedical Computing and Engineering. (2011)
4. Arachchige AS, Samarabandu J, Rogan PK, Knoll JHM. Intensity integrated Laplacian algorithm for human metaphase chromosome centromere detection. 2012 25th IEEE Canadian Conference on Electrical & Computer Engineering. pp:1-4. DOI: 10.1109/CCECE.2012.6334866. (2012)
5. Li Y, A Wickramasinghe, A Subasinghe A, J Samarabandu, J Knoll, R Wilkins, F Flegal, and PK Rogan. Towards Large Scale Automated Interpretation Of Cytogenetic Biodosimetry Data. Paper #1569626685. IEEE 6th Annual International conference on Automation for Sustainability, 2012. Pp. 30-35 DOI: 10.1109/ICIAFS.2012.6420039. (2012)
6. Ranjan R, Subasinghe A, Samarabandu J, Rogan PK, Knoll J. Automatic Detection Of Pale Path And Overlaps In Chromosome Images Using Adaptive Search Technique And Re-Thresholding. Proceedings of International Conference on Computer Vision Theory and Applications, pp. 462-466, 2012, DOI: 10.5220/0003862604620466. (2012)
7. Subasinghe A, Samarabandu J, Knoll J, Rogan PK. Intensity Integrated Laplacian Based Thickness Measurement for Detecting Human Metaphase Chromosome Centromere Location. IEEE Trans. Biomedical Engineering, 60:2005-13 DOI: 10.1109/TBME.2013.2248008. (2013)
8. Rogan PK, Y Li, A Wickramasinghe, A Subasinghe, N Caminsky, W Khan, J Samarabandu, R Wilkins, and F Flegal, JH. Knoll. Automating dicentric chromosome detection from cytogenetic biodosimetry data. Radiation Protection Dosimetry, 159: 95-104 [PMID: 24757176]. (2014)
9. Rogan PK, Li Y, Wilkins R, Flegal FN, and Knoll JHM. Radiation Dose Estimation by Automated Cytogenetic Biodosimetry. Radiation Protection Dosimetry, 172(1-3):207- 217, 2016. DOI: 10.1093/rpd/ncw161. (2016)
10. Subasinghe A, Samarabandu J, Li Y, Flegal F, Wilkins R, Knoll JHM and Rogan PK. Centromere Detection of Human Metaphase Chromosome Images using a Candidate Based Method. F1000Research, 5: 1565 doi: 10.12688/f1000research.9075.1, 2016 - Preprint at bioRxiv, doi: 10.1101/032110. (2016)
11. Shirley, B., Li, Y., Knoll, J. H. M., Rogan, P. K. Expedited Radiation Biodosimetry by Automated Dicentric Chromosome Identification (ADCI) and Dose Estimation. J. Vis. Exp. (127), e56245, doi:10.3791/56245 (2017).
12. Li Y, Knoll JHM, Wilkins RC, Flegal FN, and Rogan PK. Automated Discrimination of Dicentric and Monocentric Chromosomes by Machine Learning-Based Image Processing. Microsc Res Tech., 2016 May;79(5):393-402. doi: 10.1002/jemt.22642. (2016)
13. Liu J, Li Y, Wilkins R, Flegal F, Knoll JHM, Rogan PK. Accurate Cytogenetic Biodosimetry Through Automation Of Dicentric Chromosome Curation And Metaphase Cell Selection. F1000Research, 6: 1396 doi: 10.12688/f1000research.12226.1 (2017)
14. Li Y, Shirley BC, Wilkins RC, Norton F, Knoll JHM, Rogan PK. RADIATION DOSE ESTIMATION BY COMPLETELY AUTOMATED INTERPRETATION OF THE DICENTRIC CHROMOSOME ASSAY. Radiation Protection Dosimetry, ncy282. doi: 10.1093/rpd/ncy282 (2019)
15. Rogan PK, Mucaki EJ, Lu R, Shirley BC, Waller E, Knoll JHM. Meeting radiation dosimetry capacity requirements of population-scale exposures by geostatistical sampling. PLoS ONE 15(4): e0232008. doi: 10.1371/journal.pone.0232008 (2020)
16. Shirley BC, Knoll JHM, Moquet J, Ainsbury E, Pham ND, Norton F, Wilkins RC, Rogan PK. Estimating partial-body ionizing radiation exposure by automated cytogenetic biodosimetry. Int J Radiat Biol. 2020 Oct 6:1-12. doi: 10.1080/09553002.2020.1820611 (2020)
17. Rogan PK, Mucaki EJ, Shirley BC, Li Y, Wilkins RC, Norton F, Sevriukova O, Pham N-D, Waller E, Knoll JHM. Automated Cytogenetic Biodosimetry at Population-Scale. Radiation. 2021; 1(2):79-94. doi: 10.3390/radiation1020008 (2021)
18. Shirley, B.C., Mucaki, E.J., Knoll, J.H. and Rogan, P.K., 2022. Radiation Exposure Determination in a Secure, Cloud-based Online Environment. Rad. Prot. Dosimetry, 199 (14): 1465-1471, 2023; doi: https://doi.org/10.1093/rpd/ncac266 (2023)
